PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135327.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 570aa    MW: 63929.6 Da    PI: 8.8714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05140162123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_009135327.1 140 FVCEICNKGFQRDQNLQLHKRGH 162
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-5139162No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5139162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.0E-5140162IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.907140162IPR007087Zinc finger, C2H2
SMARTSM003550.017140162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SMARTSM00355250182212IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.61E-5212237No hitNo description
SMARTSM00355180217237IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MYMSNLLFCL RVFISICLYV SIYIDLNFFF LFFLLSVLLM MSKDILLHQQ VQQQQQEENM  60
SNLTSASGDQ TSVSSGNRTE ASGSNYFPHH QQQQQQQQQQ QFFVPESQPQ KKRRNQPGNP  120
DPESEVIALS PKTLMARNRF VCEICNKGFQ RDQNLQLHKR GHNLPWKLKQ RSNKEVIRKK  180
VYVCPEASCV HHDPTRALGD LTGIKKHFCR KHGDKKWKCD KCSKKYAVQS DCKAHSKTCG  240
TKEYRCDCGT IFSRRDSFTT HRAFCEALAK ETAREVVIPQ EQNHQPNPIL VHQSTFHHQH  300
HHQAQPNMNF SSSSPSSHNI INTLHFEINN NGTNNSNTSS NHLHTFSVKK EQQQSNDHII  360
NYHHQNIPPW LAPQDLTFSN PNPNNGGGGL FSLAASPAMS ATALLQKAAQ MGSKKTPPLP  420
PTTDFERSAH HNTLTTTMAA MMTSPSGYIS SNNNNQVLFQ GYNASDFDHH GGEEAFDDTF  480
SAFLRTNADT TTAGSDKKKS GGGGGVGEGL TRDFLGIRPL MSHNEILSIA GLGNCISGAA  540
SNQLHPKPWQ GTQVGSTKDR DASRFAWWHV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166179KLKQRSNKEVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135327.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_009135328.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_009135329.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLM4CBE30.0M4CBE3_BRARP; Uncharacterized protein
STRINGBra001523.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11